Package: avotrex 1.3.1

avotrex: A Global Dataset of Anthropogenic Extinct Birds and their Traits: Phylogeny Builder

Grafts the extinct bird species from the 'Avotrex' database (Sayol et al., in review) on to the 'BirdTree' phylogenies <https://birdtree.org>, using a set of different commands.

Authors:Joseph Wayman [aut, cre], Thomas J. Matthews [aut], Paul Dufour [ctb], Ferran Sayol [ctb], Pedro Cardoso [ctb]

avotrex_1.3.1.tar.gz
avotrex_1.3.1.zip(r-4.5)avotrex_1.3.1.zip(r-4.4)avotrex_1.3.1.zip(r-4.3)
avotrex_1.3.1.tgz(r-4.5-any)avotrex_1.3.1.tgz(r-4.4-any)avotrex_1.3.1.tgz(r-4.3-any)
avotrex_1.3.1.tar.gz(r-4.5-noble)avotrex_1.3.1.tar.gz(r-4.4-noble)
avotrex_1.3.1.tgz(r-4.4-emscripten)avotrex_1.3.1.tgz(r-4.3-emscripten)
avotrex.pdf |avotrex.html✨
avotrex/json (API)
NEWS

# Install 'avotrex' in R:
install.packages('avotrex', repos = c('https://joe-wayman.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/joe-wayman/avotrex/issues

Datasets:

On CRAN:

Conda:

4.70 score 8 scripts 273 downloads 2 exports 66 dependencies

Last updated 8 months agofrom:8db658f13d. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 27 2025
R-4.5-winOKMar 27 2025
R-4.5-macOKMar 27 2025
R-4.5-linuxOKMar 27 2025
R-4.4-winOKMar 27 2025
R-4.4-macOKMar 27 2025
R-4.4-linuxOKMar 27 2025
R-4.3-winOKMar 27 2025
R-4.3-macOKMar 27 2025

Exports:AvoBindAvoPhylo

Dependencies:apebitbit64bitopscliclusterGenerationcodacodetoolscolorspacecombinatcpp11DEoptimdigestdoParalleldoSNOWdplyrexpmfansifastmatchforeachfsgenericsglueigraphiteratorslatticelazyevallifecyclemagrittrmapsMASSMatrixmnormtnlmenumDerivoptimParallelphangornphytoolspillarpkgconfigPlotToolspurrrquadprogR.cacheR.methodsS3R.ooR.utilsR6rbibutilsRcppRCurlRdpackrlangscatterplot3dsnowstringistringrtibbletidyrtidyselecttidytreeTreeToolsutf8vctrswithryulab.utils

avotrex R Package

Joseph P. Wayman and Thomas J. Matthews

Rendered fromavotrex-r-package.Rmdusingknitr::rmarkdownon Mar 27 2025.

Last update: 2024-07-10
Started: 2024-03-28